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CELLxGENE is an open source cell-resolution data publishing and exploratory analysis platform for cell and tissue functionality.

The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology.

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Dorado is a high-performance, easy-to-use, open source basecaller for Oxford Nanopore reads.

AlphaFold is an AI system developed by DeepMind that predicts a protein’s 3D structure from its amino acid sequence.

Suite2P is an imaging processing pipeline for registration, cell detection, spike detection, and visualization of cells.

Kilosort is a MATLAB package for spike sorting electrophysiological data up to 1024 channels.

Phy is an interactive visualization and manual spike sorting of large-scale electrophysiological data.

A toolbox for large scale calcium imaging, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

DeepLabCut is a markerless pose estimation of user-defined features with deep learning for all animals, including humans.

CellProfiler is a software package for quantitative analysis of biological images.