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CELLxGENE
CELLxGENE is an open source cell-resolution data publishing and exploratory analysis platform for cell and tissue functionality.
BioPython
The Biopython Project is an association of developers of freely available Python tools for computational molecular biology.
DeepVariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Dorado
Dorado is a high-performance, easy-to-use, open source basecaller for Oxford Nanopore reads.
AlphaFold
AlphaFold is an AI system developed by DeepMind that predicts a protein’s 3D structure from its amino acid sequence.
Suite2P
Suite2P is an imaging processing pipeline for registration, cell detection, spike detection, and visualization of cells.
Kilosort
Kilosort is a MATLAB package for spike sorting electrophysiological data up to 1024 channels.
Phy
Phy is an interactive visualization and manual spike sorting of large-scale electrophysiological data.
CaImAn
A toolbox for large scale calcium imaging, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
CellProfiler
CellProfiler is a software package for quantitative analysis of biological images.
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