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Imaging processing pipeline for registration, cell detection, spike detection, and visualization of cells.

Kilosort is a MATLAB package for spike sorting electrophysiological data up to 1024 channels

Phy is an interactive visualization and manual spike sorting of large-scale electrophysiological data

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization

Markerless pose estimation of user-defined features with deep learning for all animals including humans

Software for quantitative analysis of biological images